癌のシステム生物学に有用なデータベースとソフト URL一覧
| Name | Database | ||||||
|---|---|---|---|---|---|---|---|
| Pathway (manual) | Pathway (computational) | Genome | Transcriptome | Proteome | Metabolome | Ontology | |
| BioCarta | ◎ | . | . | . | . | . | . |
| BioCyc | ◎ | . | ◎ | ◎ | ◎ | ◎ | . |
| BioXM Analysis Tool | ◎ | . | . | . | . | ◎ | . |
| BRENDA | . | . | . | . | . | ◎ | . |
| CGAP | . | . | ◎ | ◎ | ◎ | . | . |
| Cyclonet | ◎ | . | . | . | . | ◎ | . |
| ERGO bioinformatics suite | . | ◎ | ◎ | . | . | . | . |
| GeneOntology | . | . | . | . | . | . | ◎ |
| KEGG | ◎ | . | . | . | . | ◎ | . |
| MetaCore | . | . | . | ◎ | ◎ | ◎ | . |
| mips | . | . | ◎ | ◎ | ◎ | . | . |
| OWL-S | . | . | . | . | . | . | ◎ |
| PathArt | ◎ | . | . | . | . | . | . |
| Reactome | ◎ | . | . | . | . | . | . |
| TRANSPATH | ◎ | . | . | . | . | . | . |
| . | |||||||
| BALSA | . | . | . | . | . | . | . |
| BioGrid | . | . | . | . | . | . | . |
| BioNetGen | . | . | . | . | . | . | . |
| BioUML | . | . | . | . | . | . | . |
| BSTLab | . | . | . | . | . | . | . |
| CADLIVE | . | . | . | . | . | . | . |
| Cell Illustrator | . | . | . | . | . | . | . |
| CellDesigner | . | . | . | . | . | . | . |
| Cellerator | . | . | . | . | . | . | . |
| Cellware | . | . | . | . | . | . | . |
| COPASI | . | . | . | . | . | . | . |
| Cytoscape | . | . | . | . | . | . | . |
| Dizzy | . | . | . | . | . | . | . |
| E-Cell 3 | ◎ | . | . | . | . | . | . |
| ecellJ | . | . | . | . | . | . | . |
| Exact Stochastic Simulator | . | . | . | . | . | . | . |
| Extreme Pathway Analysis | . | . | . | . | . | . | . |
| FluxAnalyzer | . | . | . | . | . | . | . |
| Genetic Network Analyzser | . | . | . | . | . | . | . |
| Gepasi | . | . | . | . | . | . | . |
| Ingenuity Pathways Analysis | ◎ | . | . | . | . | . | . |
| INSILICO discovery | . | . | . | . | . | . | . |
| Japet | . | . | . | . | . | . | . |
| Jarnac | . | . | . | . | . | . | . |
| JDesigner | . | . | . | . | . | . | . |
| JigCell | . | . | . | . | . | . | . |
| JSIM | . | . | . | . | . | . | . |
| KEGG2SBML | . | . | . | . | . | . | . |
| libSBML | . | . | . | . | . | . | . |
| LSGRAPH | . | . | . | . | . | . | . |
| MathSBML | . | . | . | . | . | . | . |
| MESHGENE | . | . | . | . | . | . | . |
| MesoRD | . | . | . | . | . | . | . |
| Metabologica | . | . | . | . | . | . | . |
| NetBuilder | . | . | . | . | . | . | . |
| OmniViz PathwayEnterprise | . | . | . | . | . | . | . |
| Pathway Hunter Tool | . | . | . | . | . | . | . |
| Pathway Tool | . | . | . | . | . | . | . |
| PathwayAssist | . | ◎ | . | . | . | . | . |
| PathwayBuilder | . | . | . | . | . | . | . |
| PathwayLab | . | . | . | . | . | . | . |
| PaVESy | . | . | . | . | . | . | . |
| PySCeS | . | . | . | . | . | . | . |
| SBML Toolbox | . | . | . | . | . | . | . |
| SBW Matlab Interface | . | . | . | . | . | . | . |
| Simpathica | . | . | . | . | . | . | . |
| SimWiz | . | . | . | . | . | . | . |
| StochSim | . | . | . | . | . | . | . |
| STOCKS | . | . | . | . | . | . | . |
| Trelis | . | . | . | . | . | . | . |
| Virtual Cell | . | . | . | . | . | . | . |
| Name | Pathway (manual) | Pathway (computational) | Genome | Transcriptome | Proteome | Metabolome | Ontology |
| Database | |||||||
